recipe cami-opal

OPAL assesses and compares the performance of taxonomic metagenome profilers.

Homepage:

http://cami-challenge.org

Developer docs:

https://github.com/CAMI-challenge/OPAL

License:

Apache-2.0

Recipe:

/cami-opal/meta.yaml

package cami-opal

(downloads) docker_cami-opal

versions:
1.0.12-01.0.11-01.0.10-01.0.9-11.0.9-01.0.8.post0-01.0.5-21.0.5-01.0.2-1

1.0.12-01.0.11-01.0.10-01.0.9-11.0.9-01.0.8.post0-01.0.5-21.0.5-01.0.2-11.0.2-0

depends bokeh:

3.1.0

depends dendropy:

>=4.4.0

depends docker-py:

>=6.1.2

depends h5py:

>=2.9.0

depends jinja2:

<3.0.1

depends markupsafe:

<2.1

depends matplotlib-base:

>=3.7.1

depends numpy:

>=1.24.2

depends pandas:

>=1.5.3

depends python:

>=3.6

depends scikit-bio:

>=0.5.5

depends scipy:

>=1.10.1

depends seaborn:

>=0.12.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cami-opal

and update with::

   mamba update cami-opal

To create a new environment, run:

mamba create --name myenvname cami-opal

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cami-opal:<tag>

(see `cami-opal/tags`_ for valid values for ``<tag>``)

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