recipe chorus2

A pipeline to select oligonucleotides for fluorescence in situ hbridization (Oligo-FISH).

Homepage:

https://github.com/zhangtaolab/Chorus2

Documentation:

https://chorus2.readthedocs.io/en/dev/

License:

MIT license

Recipe:

/chorus2/meta.yaml

Links:

biotools: chorus2

package chorus2

Versions:

2.01-2,  2.01-1,  2.01-0,  2.0.1-0,  2.0-5,  2.0-4,  2.0-3,  2.0-2,  2.0-1, 

2.01-2,  2.01-1,  2.01-0,  2.0.1-0,  2.0-5,  2.0-4,  2.0-3,  2.0-2,  2.0-1,  2.0-0

Depends:

• bcftools

• bwa >=0.7.3a,<=0.7.8

• kmer-jellyfish 2.*

• matplotlib-base >=3

• numpy

• pandas

• primer3-py >=0.4.2

• pybedtools

• pybigwig

• pyfasta

• pyqt <5.11

• python >=3.9,<3.10.0a0

• python_abi 3.9.* *_cp39

• samtools

• sip >=4

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install chorus2

and update with:

conda update chorus2

or use the docker container:

docker pull quay.io/biocontainers/chorus2:<tag>

(see chorus2/tags for valid values for <tag>)

Download stats

Link to this page

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