recipe cooltools

Analysis tools for genomic interaction data stored in .cool format

Homepage:

https://github.com/open2c/cooltools

Documentation:

https://cooltools.readthedocs.io

License:

MIT / MIT

Recipe:

/cooltools/meta.yaml

package cooltools

Versions:

0.5.1-1,  0.5.1-0,  0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3.2-2,  0.3.2-1,  0.3.2-0

Depends:

• bioframe >=0.3.1

• click >=7

• cooler >=0.8.5

• cytoolz <0.11

• joblib

• libgcc-ng >=10.3.0

• matplotlib-base

• numba

• numpy

• pandas >=1.3

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• scikit-image

• scikit-learn

• scipy

Required By:

• basenji

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cooltools

and update with:

conda update cooltools

or use the docker container:

docker pull quay.io/biocontainers/cooltools:<tag>

(see cooltools/tags for valid values for <tag>)

Download stats

Link to this page

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