recipe crispresso2

A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments

Homepage:

https://github.com/pinellolab/CRISPResso2

License:

Partners

Recipe:

/crispresso2/meta.yaml

package crispresso2

Versions:

2.2.12-1,  2.2.12-0,  2.2.11-0,  2.2.10-2,  2.2.10-1,  2.2.10-0,  2.2.9-1,  2.2.9-0,  2.2.8-0, 

2.2.12-1,  2.2.12-0,  2.2.11-0,  2.2.10-2,  2.2.10-1,  2.2.10-0,  2.2.9-1,  2.2.9-0,  2.2.8-0,  2.2.7-1,  2.2.7-0,  2.2.6-1,  2.2.6-0,  2.2.5-0,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.0-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-1,  2.1.0-0,  2.0.45-1,  2.0.45-0,  2.0.44-0,  2.0.43-0,  2.0.42-0,  2.0.40-0,  2.0.39-0,  2.0.38-0,  2.0.32-0,  2.0.31-0,  2.0.30-0,  2.0.29-0,  2.0.28-0,  2.0.27-3,  2.0.23-1,  2.0.23-0

Depends:

• bowtie2

• flash

• jinja2

• libgcc-ng >=12

• matplotlib-base

• numpy >=1.21.6,<2.0a0

• pandas

• plotly

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• samtools

• scipy

• seaborn-base

• trimmomatic

Required By:

• crisprlungo

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install crispresso2

and update with:

conda update crispresso2

or use the docker container:

docker pull quay.io/biocontainers/crispresso2:<tag>

(see crispresso2/tags for valid values for <tag>)

Download stats

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