recipe dammit

simple de novo transcriptome annotator

Homepage:

http://dib-lab.github.io/dammit/

License:

BSD

Recipe:

/dammit/meta.yaml

package dammit

versions:

1.2-0,  1.1.1-0,  1.1-0,  1.0-4,  1.0-3,  1.0.rc0-0,  1.0rc2-2,  1.0rc2-0,  0.3.2-0, 

1.2-0,  1.1.1-0,  1.1-0,  1.0-4,  1.0-3,  1.0.rc0-0,  1.0rc2-2,  1.0rc2-0,  0.3.2-0,  0.3-0

depends bioconductor-seqlogo:

depends busco:

3.0.2

depends doit:

>=0.29.0

depends hmmer:

depends infernal:

depends khmer:

>=2.1

depends last:

depends matplotlib:

depends numexpr:

>=2.3.1

depends numpy:

depends pandas:

depends parallel:

depends python:

>3

depends sh:

depends shmlast:

depends sphinx:

>1.3.1

depends sphinx_rtd_theme:

>=0.1.9

depends transdecoder:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dammit

and update with::

   mamba update dammit

To create a new environment, run:

mamba create --name myenvname dammit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dammit:<tag>

(see `dammit/tags`_ for valid values for ``<tag>``)

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