recipe dammit

simple de novo transcriptome annotator

Homepage

http://www.camillescott.org/dammit/

Developer docs

https://github.com/camillescott/dammit

License

BSD / BSD

Recipe

/dammit/meta.yaml

package dammit

Versions

1.0-3, 1.0.rc0-0, 1.0rc2-2, 1.0rc2-0, 0.3.2-0, 0.3-0

Depends

• busco 3.0.2

• doit >=0.29.0

• hmmer

• infernal

• khmer >=2.1

• last

• matplotlib

• numexpr >=2.3.1

• numpy

• pandas

• parallel

• pytest

• pytest-runner

• python >=3.5,<3.6.0a0

• shmlast

• sphinx >1.3.1

• sphinx_rtd_theme >=0.1.9

• transdecoder

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dammit

and update with:

conda update dammit

or use the docker container:

docker pull quay.io/biocontainers/dammit:<tag>

(see dammit/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dammit/README.html)