recipe dnarrange

Find rearrangements in "long" DNA reads relative to a genome sequence

Homepage:

https://github.com/mcfrith/dnarrange

License:

GPL-3.0-or-later

Recipe:

/dnarrange/meta.yaml

package dnarrange

(downloads) docker_dnarrange

versions:

1.6.1-01.6.0-01.5.3-01.5.2-01.5.1-01.5.0-01.4.6-0

depends lamassemble:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dnarrange

and update with::

   mamba update dnarrange

To create a new environment, run:

mamba create --name myenvname dnarrange

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dnarrange:<tag>

(see `dnarrange/tags`_ for valid values for ``<tag>``)

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