recipe dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

Homepage:

https://github.com/hms-dbmi/dropEst/

License:

GPL3

Recipe:

/dropest/meta.yaml

package dropest

Versions:

0.8.6-4,  0.8.6-3,  0.8.6-2,  0.8.6-1,  0.8.6-0,  0.8.5-1,  0.8.5-0

Depends:

• boost >=1.74.0,<1.74.1.0a0

• bzip2 >=1.0.8,<2.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-ks

• r-magrittr

• r-matrix

• r-pcapp

• r-rcpp

• r-rcppeigen

• r-rcppprogress

• r-rinside

• zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install dropest

and update with:

conda update dropest

or use the docker container:

docker pull quay.io/biocontainers/dropest:<tag>

(see dropest/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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