recipe dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

Homepage

https://github.com/hms-dbmi/dropEst/

License

GPL3

Recipe

/dropest/meta.yaml

package dropest

Versions

0.8.6-1,  0.8.6-0,  0.8.5-1,  0.8.5-0

Depends

• boost >=1.70.0,<1.70.1.0a0

• bzip2 >=1.0.8,<2.0a0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-ggplot2

• r-ks

• r-magrittr

• r-matrix

• r-pcapp

• r-rcpp

• r-rcppeigen

• r-rcppprogress

• r-rinside

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dropest

and update with:

conda update dropest

or use the docker container:

docker pull quay.io/biocontainers/dropest:<tag>

(see dropest/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dropest/README.html)