recipe entrez-direct

Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.

Homepage:

ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/16.2.20211103/README

License:

PUBLIC DOMAIN

Recipe:

/entrez-direct/meta.yaml

package entrez-direct

Versions:

16.2-1,  16.2-0,  15.6-1,  15.6-0,  13.9-2,  13.9-1,  13.9-0,  13.8-0,  13.3-0, 

16.2-1,  16.2-0,  15.6-1,  15.6-0,  13.9-2,  13.9-1,  13.9-0,  13.8-0,  13.3-0,  11.0-2,  11.0-1,  11.0-0,  10.2-0,  10.0-0,  7.70-2,  7.70-1,  7.70-0,  7.00-1,  7.00-0,  5.80-0,  4.00-1,  4.00-0

Depends:

• wget

Required By:

• rmblast

• gridss

• uscdc-datasets-sars-cov-2

• blast

• hybran

• virmet

• rnalien

• efishent

• gtotree

• metabinkit

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install entrez-direct

and update with:

conda update entrez-direct

or use the docker container:

docker pull quay.io/biocontainers/entrez-direct:<tag>

(see entrez-direct/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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