recipe epic2

Ultraperformant Chip-Seq broad domain finder based on SICER.

Homepage:

http://github.com/endrebak/epic2

License:

MIT

Recipe:

/epic2/meta.yaml

Links:

doi: 10.1093/bioinformatics/btz232

package epic2

Versions:

0.0.52-2,  0.0.52-1,  0.0.52-0,  0.0.51-0,  0.0.50-0,  0.0.48-1,  0.0.48-0,  0.0.47-0,  0.0.44-0, 

0.0.52-2,  0.0.52-1,  0.0.52-0,  0.0.51-0,  0.0.50-0,  0.0.48-1,  0.0.48-0,  0.0.47-0,  0.0.44-0,  0.0.43-0,  0.0.41-3,  0.0.41-2,  0.0.41-1,  0.0.41-0,  0.0.40-0,  0.0.39-0,  0.0.37-0,  0.0.36-0,  0.0.35-0,  0.0.34-0,  0.0.33-0,  0.0.26-0,  0.0.16-0,  0.0.15-0

Depends:

• htslib >=1.14,<1.15.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• natsort

• numpy

• pysam

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install epic2

and update with:

conda update epic2

or use the docker container:

docker pull quay.io/biocontainers/epic2:<tag>

(see epic2/tags for valid values for <tag>)

Download stats

Link to this page

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