recipe estmapper

Software package for the high-throughput alignment of large cDNA (EST, mRNA) sequence sets to a large eukaryotic genome of the same species.

Homepage:

http://kmer.sourceforge.net/wiki/index.php/Getting_Started_with_ESTmapper

License:

GPL

Recipe:

/estmapper/meta.yaml

package estmapper

Versions:

2008-6,  2008-5,  2008-4,  2008-3,  2008-2,  2008-1,  2008-0

Depends:

• bzip2 >=1.0.8,<2.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• perl >=5.32.1,<5.33.0a0 *_perl5

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

Required By:

• wgs-assembler

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install estmapper

and update with:

conda update estmapper

or use the docker container:

docker pull quay.io/biocontainers/estmapper:<tag>

(see estmapper/tags for valid values for <tag>)

Download stats

Link to this page

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