recipe freebayes

Bayesian haplotype-based polymorphism discovery and genotyping

Homepage

https://github.com/ekg/freebayes

License

MIT / MIT

Recipe

/freebayes/meta.yaml

Links

biotools: freebayes

package freebayes

(downloads) docker_freebayes

Versions

1.3.1-0, 1.2.0-4, 1.2.0-3, 1.2.0-2, 1.2.0-0, 1.1.0.46-5, 1.1.0.46-4, 1.1.0.46-3, 1.1.0.46-2, 1.1.0.46-1, 1.1.0.46-0, 1.1.0-3, 1.1.0-2, 1.1.0-1, 1.1.0-0, 1.0.2.29-2, 1.0.2.29-1, 1.0.2.29-0, 1.0.2-0, 1.0.1-0, 0.9.21.26-0, 0.9.21.7-0

Depends bzip2

>=1.0.6,<2.0a0

Depends htslib

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends parallel

Depends python

>=2.7,<2.8.0a0

Depends xz

>=5.2.4,<5.3.0a0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install freebayes

and update with:

conda update freebayes

or use the docker container:

docker pull quay.io/biocontainers/freebayes:<tag>

(see freebayes/tags for valid values for <tag>)