recipe genomepy

Install and use genomes & gene annotations the easy way!

Homepage:

https://github.com/vanheeringen-lab/genomepy

Documentation:

https://vanheeringen-lab.github.io/genomepy

License:

MIT / MIT

Recipe:

/genomepy/meta.yaml

Install and use genomes & gene annotations the easy way!

package genomepy

Versions:

0.15.0-0,  0.14.0-2,  0.14.0-1,  0.14.0-0,  0.13.1-0,  0.13.0-0,  0.12.0-0,  0.11.1-0,  0.11.0-0, 

0.15.0-0,  0.14.0-2,  0.14.0-1,  0.14.0-0,  0.13.1-0,  0.13.0-0,  0.12.0-0,  0.11.1-0,  0.11.0-0,  0.10.0-0,  0.9.3-0,  0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.4-0,  0.8.3-0,  0.8.2-0,  0.8.1-1,  0.8.1-0,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.1-0,  0.6.0-0,  0.5.5-1,  0.5.5-0,  0.5.4-1,  0.5.4-0,  0.5.2-2,  0.5.2-1,  0.5.1-0,  0.5.0-0,  0.4.0-0,  0.3.1-0

Depends:

• appdirs

• biopython >=1.73

• click

• colorama

• diskcache

• filelock >=3.5

• htslib >=1.11

• loguru

• mygene

• mysql-connector-python

• norns >=0.1.6

• numpy

• pandas

• pyfaidx >=0.7.2.1

• python >=3.7

• requests

• tqdm >=4.51

• ucsc-bedtogenepred

• ucsc-genepredtobed

• ucsc-genepredtogtf

• ucsc-gff3togenepred

• ucsc-gtftogenepred

Required By:

• gimmemotifs-minimal

• seq2science

• ananse

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install genomepy

and update with:

conda update genomepy

or use the docker container:

docker pull quay.io/biocontainers/genomepy:<tag>

(see genomepy/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genomepy/README.html)