recipe htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

Homepage

https://github.com/simon-anders/htseq

License

GPL-3.0

Recipe

/htseq/meta.yaml

Links

biotools: htseq, doi: 10.1093/bioinformatics/btu638

package htseq

(downloads) docker_htseq

Versions

0.11.2-1, 0.11.2-0, 0.11.1-0, 0.11.0-1, 0.11.0-0, 0.9.1-2, 0.9.1-1, 0.9.1-0, 0.7.2-2, 0.7.2-1, 0.7.2-0, 0.6.1.post1-3, 0.6.1.post1-2, 0.6.1.post1-1, 0.6.1.post1-0, 0.6.1-2, 0.6.1-1, 0.6.1-0, 0.6.1p1-1, 0.6.1p1-0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends matplotlib

>=1.4

Depends numpy

>=1.9.3,<2.0a0

Depends pysam

>=0.9.0

Depends python

>=2.7,<2.8.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install htseq

and update with:

conda update htseq

or use the docker container:

docker pull quay.io/biocontainers/htseq:<tag>

(see htseq/tags for valid values for <tag>)