recipe htslib

C library for high-throughput sequencing data formats.

Homepage:

https://github.com/samtools/htslib

License:

MIT

Recipe:

/htslib/meta.yaml

Links:

biotools: HTSlib

package htslib

(downloads) docker_htslib

versions:
1.18-0,  1.17-2,  1.17-1,  1.17-0,  1.16-0,  1.15.1-1,  1.15.1-0,  1.15-0,  1.14-2, 

1.18-0,  1.17-2,  1.17-1,  1.17-0,  1.16-0,  1.15.1-1,  1.15.1-0,  1.15-0,  1.14-2,  1.14-1,  1.14-0,  1.13-0,  1.12-1,  1.12-0,  1.11-2,  1.11-1,  1.11-0,  1.10.2-1,  1.10.2-0,  1.10.1-0,  1.10-1,  1.10-0,  1.9-9,  1.9-8,  1.9-7,  1.9-6,  1.9-5,  1.9-4,  1.9-3,  1.9-2,  1.9-1,  1.9-0,  1.8-2,  1.8-1,  1.8-0,  1.7-0,  1.6-0,  1.5-0,  1.4.1-0,  1.4-0,  1.3.2-0,  1.3.1-7,  1.3.1-6,  1.3.1-5,  1.3.1-4,  1.3.1-3,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3-1,  1.3-0,  1.2.1-0,  1.1-5,  1.1-4,  1.1-3,  1.1-2,  1.1-1,  1.1-0

depends bzip2:

>=1.0.8,<2.0a0

depends libcurl:

>=8.2.0,<9.0a0

depends libdeflate:

>=1.18,<1.20.0a0

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends openssl:

>=3.1.1,<4.0a0

depends xz:

>=5.2.6,<6.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install htslib

and update with::

   mamba update htslib

To create a new environment, run:

mamba create --name myenvname htslib

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/htslib:<tag>

(see `htslib/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/htslib/README.html)