recipe itsx

ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.

Homepage

http://microbiology.se/software/itsx/

License

GNU General Public License v3.0

Recipe

/itsx/meta.yaml

package itsx

Versions

1.1.3-1,  1.1.3-0,  1.1.2-0,  1.1b-2,  1.1b-1,  1.1b-0

Depends

• hmmer >=3.1b2

• perl

Required By

• pipits

• lotus2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install itsx

and update with:

conda update itsx

or use the docker container:

docker pull quay.io/biocontainers/itsx:<tag>

(see itsx/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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