recipe lumpy-sv

a general probabilistic framework for structural variant discovery

Homepage:

https://github.com/arq5x/lumpy-sv

License:

MIT

Recipe:

/lumpy-sv/meta.yaml

package lumpy-sv

Versions:

0.3.1-3,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-6,  0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2, 

0.3.1-3,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-6,  0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.14a-2,  0.2.14a-1,  0.2.14a-0,  0.2.13-1,  0.2.13-0,  0.2.12-3,  0.2.12-2,  0.2.12-1,  0.2.12-0,  0.2.11-0

Depends:

• bamkit

• gawk

• htslib

• lumpy-sv-minimal 0.3.1.*

• numpy

• pysam

• python 2.7.*

• sambamba

• samblaster

• samtools

• util-linux

Required By:

• smoove

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install lumpy-sv

and update with:

conda update lumpy-sv

or use the docker container:

docker pull quay.io/biocontainers/lumpy-sv:<tag>

(see lumpy-sv/tags for valid values for <tag>)

Download stats

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