recipe megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

Homepage

https://github.com/voutcn/megahit

License

GPL / GPL-3.0

Recipe

/megahit/meta.yaml

Links

biotools: megahit, doi: 10.1093/bioinformatics/btv033

package megahit

(downloads) docker_megahit

Versions
1.2.9-01.2.8-01.2.7-01.2.6-01.1.3-01.1.2-11.1.2-01.1.1-01.0.6-1

1.2.9-01.2.8-01.2.7-01.2.6-01.1.3-01.1.2-11.1.2-01.1.1-01.0.6-11.0.3-11.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install megahit

and update with:

conda update megahit

or use the docker container:

docker pull quay.io/biocontainers/megahit:<tag>

(see megahit/tags for valid values for <tag>)