recipe metapi

A general metagenomics data mining system focus on robust microbiome research



GPL / GPL-3.0-only




biotools: metapi

package metapi

(downloads) docker_metapi



depends biopython:


depends fd-find:

depends matplotlib-base:

depends natsort:

depends numpy:

depends openpyxl:

depends pandas:

depends pigz:

depends python:


depends ruamel.yaml:

depends seaborn:

depends seqkit:

depends seqtk:

depends snakemake:


depends sra-tools:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metapi

and update with::

   mamba update metapi

To create a new environment, run:

mamba create --name myenvname metapi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `metapi/tags`_ for valid values for ``<tag>``)

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