recipe metapi

A general metagenomics data mining system focus on robust microbiome research

Homepage:

https://github.com/ohmeta/metapi

License:

GPL / GPL-3.0-only

Recipe:

/metapi/meta.yaml

Links:

biotools: metapi

package metapi

Versions:

2.5.0-0,  2.4.0-0,  2.3.0-0,  2.2.0-0,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  1.1.0-0, 

2.5.0-0,  2.4.0-0,  2.3.0-0,  2.2.0-0,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  1.1.0-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0

Depends:

• biopython >=1.73

• fd-find

• matplotlib-base

• natsort

• numpy

• openpyxl

• pandas

• pigz

• python >=3.7

• ruamel.yaml

• seaborn

• seqkit

• seqtk

• snakemake >=7.0

• sra-tools >=2.11.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metapi

and update with:

conda update metapi

or use the docker container:

docker pull quay.io/biocontainers/metapi:<tag>

(see metapi/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metapi/README.html)