recipe ncbi-ngs-sdk

NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.

Homepage:

https://github.com/ncbi/ngs

License:

Public Domain

Recipe:

/ncbi-ngs-sdk/meta.yaml

package ncbi-ngs-sdk

versions:

3.0.1-3,  3.0.1-2,  3.0.1-1,  3.0.1-0,  2.11.2-1,  2.11.2-0,  2.11.1-0,  2.11.0-0,  2.10.9-1, 

3.0.1-3,  3.0.1-2,  3.0.1-1,  3.0.1-0,  2.11.2-1,  2.11.2-0,  2.11.1-0,  2.11.0-0,  2.10.9-1,  2.10.9-0,  2.10.4-1,  2.10.4-0,  2.10.2-0,  2.10.1-0,  2.10.0-0,  2.9.3-0,  2.9.1-0,  2.9.0-0

depends libgcc-ng:

>=12

depends libiconv:

>=1.17,<2.0a0

depends libstdcxx-ng:

>=12

depends libxml2:

>=2.11.6,<2.12.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ncbi-ngs-sdk

and update with::

   mamba update ncbi-ngs-sdk

To create a new environment, run:

mamba create --name myenvname ncbi-ngs-sdk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ncbi-ngs-sdk:<tag>

(see `ncbi-ngs-sdk/tags`_ for valid values for ``<tag>``)

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