recipe panoct

PanOCT, Pan-genome Ortholog Clustering Tool, is a program for pan-genomic analysis of closely related prokaryotic species or strains

Homepage:

https://panoct.sourceforge.io/

License:

GPL-3.0

Recipe:

/panoct/meta.yaml

package panoct

(downloads) docker_panoct

versions:

3.23-1,  3.23-0

depends perl:

>=5.26.2,<5.27.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install panoct

and update with::

   mamba update panoct

To create a new environment, run:

mamba create --name myenvname panoct

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/panoct:<tag>

(see `panoct/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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