recipe piranha

Piranha is a peak-caller for CLIP- and RIP-Seq data.

Homepage:

http://smithlabresearch.org/software/piranha/

License:

GNU General Public License v3 (GPLv3)

Recipe:

/piranha/meta.yaml

package piranha

versions:

1.2.1-11,  1.2.1-10,  1.2.1-9,  1.2.1-8,  1.2.1-7,  1.2.1-6,  1.2.1-5,  1.2.1-3,  1.2.1-2, 

1.2.1-11,  1.2.1-10,  1.2.1-9,  1.2.1-8,  1.2.1-7,  1.2.1-6,  1.2.1-5,  1.2.1-3,  1.2.1-2,  1.2.1-1,  1.2.1-0

depends bamtools:

>=2.5.1,<2.5.2.0a0

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=10.3.0

depends libstdcxx-ng:

>=10.3.0

depends python_abi:

2.7.* *_cp27mu

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install piranha

and update with::

   mamba update piranha

To create a new environment, run:

mamba create --name myenvname piranha

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/piranha:<tag>

(see `piranha/tags`_ for valid values for ``<tag>``)

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