recipe plant_tribes_assembly_post_processor

Transcriptome assembly post processing pipeline

Homepage

https://github.com/dePamphilis/PlantTribes

License

GNU General Public License v3 (GPLv3)

Recipe

/plant_tribes_assembly_post_processor/meta.yaml

package plant_tribes_assembly_post_processor

Versions

1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-1,  1.0.2-0,  1.0.1-1,  1.0.1-0,  1.0.0-1,  1.0.0-0

Depends

• cap3

• genometools-genometools >=1,<2

• hmmer >=3

• mafft >=7,<8

• perl >=5.22

• perl-estscan2

• transdecoder >=5,<6

• trimal >=1.4,<2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install plant_tribes_assembly_post_processor

and update with:

conda update plant_tribes_assembly_post_processor

or use the docker container:

docker pull quay.io/biocontainers/plant_tribes_assembly_post_processor:<tag>

(see plant_tribes_assembly_post_processor/tags for valid values for <tag>)

Link to this page

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