recipe ppanggolin

PPanGGOLiN : Depicting microbial species diversity via a Partitioned PanGenome Graph

Homepage

https://github.com/labgem/PPanGGOLiN

License

CeCiLL 2.1

Recipe

/ppanggolin/meta.yaml

package ppanggolin

Versions

1.1.85-0,  1.1.72-0,  1.0.13-0,  1.0.1-0,  1.0.0-0,  v0.3.88-1,  v0.3.88-0

Depends

• aragorn 1.2.*

• colorlover 0.3.*

• gmpy2 2.*

• infernal 1.1.*

• libgcc-ng >=7.5.0

• mmseqs2

• networkx 2.3.*

• numpy 1.16.*

• pandas 0.25.*

• plotly 4.*

• prodigal 2.6.*

• pytables 3.*

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• r-genoplotr 0.8.*

• rpy2 2.*

• scipy 1.3.*

• tqdm 4.*

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ppanggolin

and update with:

conda update ppanggolin

or use the docker container:

docker pull quay.io/biocontainers/ppanggolin:<tag>

(see ppanggolin/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ppanggolin/README.html)