recipe pybedtools

Wraps BEDTools for use in Python and adds many additional features.

Homepage

https://github.com/daler/pybedtools

License

MIT

Recipe

/pybedtools/meta.yaml

Links

biotools: pybedtools

package pybedtools

(downloads) docker_pybedtools

Versions

0.8.0-1, 0.8.0-0, 0.7.10-3, 0.7.10-2, 0.7.10-1, 0.7.10-0, 0.7.9-0, 0.7.8-1, 0.7.7-1, 0.7.6-1, 0.7.5-0, 0.7.4-0, 0.7.2-1, 0.7.0-1, 0.6.9-3, 0.6.9-2, 0.6.9-1, 0.6.9-0

Depends bedtools

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends pandas

Depends pysam

>=0.8.1

Depends python

>=2.7,<2.8.0a0

Depends six

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pybedtools

and update with:

conda update pybedtools

or use the docker container:

docker pull quay.io/biocontainers/pybedtools:<tag>

(see pybedtools/tags for valid values for <tag>)