recipe pyfaidx

pyfaidx: efficient pythonic random access to fasta subsequences

Homepage:

https://github.com/mdshw5/pyfaidx/

License:

BSD / BSD License

Recipe:

/pyfaidx/meta.yaml

Links:

biotools: pyfaidx, doi: 10.7287/peerj.preprints.970v1

package pyfaidx

Versions:

0.7.2.1-1,  0.7.2.1-0,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.4-0,  0.6.3.1-1,  0.6.3.1-0,  0.6.2-0, 

0.7.2.1-1,  0.7.2.1-0,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.4-0,  0.6.3.1-1,  0.6.3.1-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.9.5-0,  0.5.9.4-0,  0.5.9.2-0,  0.5.9.1-1,  0.5.9.1-0,  0.5.9-1,  0.5.9-0,  0.5.8-1,  0.5.8-0,  0.5.7-0,  0.5.6-0,  0.5.5.2-1,  0.5.5.2-0,  0.5.4.1-0,  0.5.3-0,  0.5.1-0,  0.5.0-0,  0.4.9.2-0,  0.4.8.1-4,  0.4.8.1-3,  0.4.8.1-2,  0.4.8.1-0,  0.4.7.1-3,  0.4.7.1-2,  0.4.7.1-0,  0.4.4-0

Depends:

• biopython

• packaging

• python

• pyvcf3

• setuptools

• six

Required By:

• sensv

• ribotricer

• liftoff

• nanocompore

• ont-tombo

• refgenie

• rgi

• cooler

• gffutils

• cnvkit

• seqiolib

• bioframe

• swga

• insurveyor

• mirnature

• talon

• flippyr

• pygenometracks

• yamda

• consplice

• dr-disco

• squire

• kipoiseq

• genomepy

• riboraptor

• extract_genome_region

• methplotlib

• selene-sdk

• peaksql

• isoquant

• visor

• svviz

• mirfix

• artic

• galaxy-ml

• epic

• bioformats

• rnftools

• whatshap

• imfusion

• spliceai

• chromosomer

• mikado

• stringmlst

• bamsnap

• liftofftools

• wisestork

• pygmes

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pyfaidx

and update with:

conda update pyfaidx

or use the docker container:

docker pull quay.io/biocontainers/pyfaidx:<tag>

(see pyfaidx/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyfaidx/README.html)