recipe r-acidsinglecell

Toolkit for single-cell RNA-seq analysis that extends the functionality of SingleCellExperiment.

Homepage:

https://r.acidgenomics.com/packages/acidsinglecell/

Developer docs:

https://github.com/acidgenomics/r-acidsinglecell

License:

GPL / AGPL-3.0

Recipe:

/r-acidsinglecell/meta.yaml

package r-acidsinglecell

Versions:

0.3.5-1,  0.3.5-0,  0.3.4-1,  0.3.4-0,  0.3.3-1,  0.3.3-0,  0.2.0-0,  0.1.9-0,  0.1.8-0, 

0.3.5-1,  0.3.5-0,  0.3.4-1,  0.3.4-0,  0.3.3-1,  0.3.3-0,  0.2.0-0,  0.1.9-0,  0.1.8-0,  0.1.7-2,  0.1.7-1,  0.1.7-0

Depends:

• bioconductor-biobase >=2.56.0

• bioconductor-biocgenerics >=0.42.0

• bioconductor-biocio >=1.6.0

• bioconductor-biocparallel >=1.30.0

• bioconductor-deseq2 >=1.36.0

• bioconductor-dropletutils >=1.16.0

• bioconductor-edger >=3.38.4

• bioconductor-iranges >=2.30.1

• bioconductor-s4vectors >=0.34.0

• bioconductor-scuttle >=1.6.3

• bioconductor-singlecellexperiment >=1.18.0

• bioconductor-summarizedexperiment >=1.26.0

• r-acidbase >=0.6.8

• r-acidcli >=0.2.4

• r-acidexperiment >=0.4.4

• r-acidgenerics >=0.6.4

• r-acidgenomes >=0.4.4

• r-acidplyr >=0.3.2

• r-base >=4.2,<4.3.0a0

• r-goalie >=0.6.6

• r-matrix >=1.5.1

• r-pipette >=0.10.0

• r-stringi >=1.7.8

• r-syntactic >=0.6.3

Required By:

• r-acidplots

• r-bcbiosinglecell

• r-chromium

• r-basejump

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-acidsinglecell

and update with:

conda update r-acidsinglecell

or use the docker container:

docker pull quay.io/biocontainers/r-acidsinglecell:<tag>

(see r-acidsinglecell/tags for valid values for <tag>)

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