recipe r-acidsinglecell

Toolkit for single-cell RNA-seq analysis that extends the functionality of SingleCellExperiment.

Homepage:

https://r.acidgenomics.com/packages/acidsinglecell/

Developer docs:

https://github.com/acidgenomics/r-acidsinglecell

License:

GPL / AGPL-3.0

Recipe:

/r-acidsinglecell/meta.yaml

package r-acidsinglecell

Versions:

0.2.0-0,  0.1.9-0,  0.1.8-0,  0.1.7-2,  0.1.7-1,  0.1.7-0

Depends:

• bioconductor-biobase

• bioconductor-biocgenerics

• bioconductor-biocio

• bioconductor-biocparallel

• bioconductor-deseq2

• bioconductor-dropletutils

• bioconductor-edger

• bioconductor-iranges

• bioconductor-s4vectors

• bioconductor-scuttle

• bioconductor-singlecellexperiment

• bioconductor-summarizedexperiment

• r-acidbase >=0.5.0

• r-acidcli >=0.2.0

• r-acidexperiment >=0.3.0

• r-acidgenerics >=0.6.0

• r-acidgenomes >=0.3.0

• r-acidplyr >=0.2.0

• r-base >=4.1,<4.2.0a0

• r-goalie >=0.6.0

• r-matrix

• r-pipette >=0.8.0

• r-scales

• r-stringr

• r-syntactic >=0.5.1

Required By:

• r-acidplots

• r-basejump

• r-bcbiosinglecell

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-acidsinglecell

and update with:

conda update r-acidsinglecell

or use the docker container:

docker pull quay.io/biocontainers/r-acidsinglecell:<tag>

(see r-acidsinglecell/tags for valid values for <tag>)

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