recipe r-scpred

Bioconda-installable version of scPred cell type classification method.

Homepage:

https://github.com/powellgenomicslab/scPred

Developer docs:

https://github.com/powellgenomicslab/scPred/tree/development

License:

MIT

Recipe:

/r-scpred/meta.yaml

package r-scpred

Versions:

1.9.2-0,  1.9.0-0,  1.0-2,  1.0-1,  1.0-0,  v1.9.0-2,  v1.9.0-1,  v1.9.0-0

Depends:

• r-caret

• r-cli

• r-crayon

• r-ggbeeswarm

• r-ggplot2

• r-harmony

• r-kernlab

• r-knitr

• r-mlmetrics

• r-pbapply

• r-proc

• r-seuratobject

Required By:

• scpred-cli

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-scpred

and update with:

conda update r-scpred

or use the docker container:

docker pull quay.io/biocontainers/r-scpred:<tag>

(see r-scpred/tags for valid values for <tag>)

Download stats

Link to this page

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