recipe r-stitch

STITCH - Sequencing To Imputation Through Constructing Haplotypes

Homepage:

https://github.com/rwdavies/stitch

License:

GPL3 / GPL3

Recipe:

/r-stitch/meta.yaml

package r-stitch

Versions:

1.6.6-2,  1.6.6-1,  1.6.6-0,  1.6.5-3,  1.6.5-2,  1.6.5-0,  1.6.3-1,  1.6.3-0,  1.6.2-0, 

1.6.6-2,  1.6.6-1,  1.6.6-0,  1.6.5-3,  1.6.5-2,  1.6.5-0,  1.6.3-1,  1.6.3-0,  1.6.2-0,  1.6.0-1,  1.6.0-0,  1.5.7-0,  1.5.5-0,  1.5.4-0

Depends:

• gmp >=6.2.1,<7.0a0

• htslib >=1.4

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• mpc >=1.1.0

• mpc >=1.2.1,<2.0a0

• mpfr >=4.1.0,<5.0a0

• r-base >=4.1,<4.2.0a0

• r-data.table >=1.11.8

• r-rcpp >=0.12.18

• r-rcpparmadillo >=0.8.600.0.0

• r-rrbgen >=0.0.6

• r-testthat >=2.0.0

• rsync

• samtools >=1.4

• xz >=5.2.5,<5.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By:

• r-quilt

• r-sew

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-stitch

and update with:

conda update r-stitch

or use the docker container:

docker pull quay.io/biocontainers/r-stitch:<tag>

(see r-stitch/tags for valid values for <tag>)

Download stats

Link to this page

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