recipe shorah/1.1.3

The Short Reads Assembly into Haplotypes (ShoRAH) program for inferring viral haplotypes from NGS data

Homepage:

https://github.com/cbg-ethz/shorah

License:

GPL3 / GPLv3

Recipe:

/shorah/1.1.3/meta.yaml

Links:

biotools: shorah

package shorah

Versions:

1.99.2-8,  1.99.2-7,  1.99.2-6,  1.99.2-5,  1.99.2-4,  1.99.2-3,  1.99.2-2,  1.99.2-1,  1.99.2-0, 

1.99.2-8,  1.99.2-7,  1.99.2-6,  1.99.2-5,  1.99.2-4,  1.99.2-3,  1.99.2-2,  1.99.2-1,  1.99.2-0,  1.99.1-1,  1.99.1-0,  1.99.0-8,  1.99.0-7,  1.99.0-6,  1.99.0-5,  1.99.0-4,  1.99.0-3,  1.99.0-2,  1.99.0-1,  1.99.0-0,  1.1.3-11,  1.1.3-10,  1.1.3-9,  1.1.3-8,  1.1.3-7,  1.1.3-6,  1.1.3-5,  1.1.3-4,  1.1.3-2,  1.1.3-1,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

Depends:

• biopython

• htslib >=1.17,<1.18.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• numpy

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install shorah

and update with:

conda update shorah

or use the docker container:

docker pull quay.io/biocontainers/shorah:<tag>

(see shorah/tags for valid values for <tag>)

Download stats

Link to this page

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