recipe shorah/1.1.0

The Short Reads Assembly into Haplotypes (ShoRAH) program for inferring viral haplotypes from NGS data

Homepage

https://github.com/cbg-ethz/shorah

License

GPLv3

Recipe

/shorah/1.1.0/meta.yaml

Links

biotools: shorah

package shorah

(downloads) docker_shorah

Versions

1.1.3-2, 1.1.3-1, 1.1.3-0, 1.1.2-0, 1.1.1-0, 1.1.0-2, 1.1.0-1, 1.1.0-0, 1.0.0-2, 1.0.0-1, 1.0.0-0

Depends biopython

Depends blas

1.1 openblas

Depends gsl

>=2.2.1,<2.3.0a0

Depends libgcc-ng

>=4.9

Depends numpy

Depends perl

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install shorah

and update with:

conda update shorah

or use the docker container:

docker pull quay.io/biocontainers/shorah:<tag>

(see shorah/tags for valid values for <tag>)