recipe snp-sites

Finds SNP sites from a multi-FASTA alignment file.

Homepage:

https://github.com/sanger-pathogens/snp-sites

License:

GPL / GPL-3.0

Recipe:

/snp-sites/meta.yaml

package snp-sites

Versions:

2.5.1-4,  2.5.1-3,  2.5.1-2,  2.5.1-1,  2.5.1-0,  2.4.1-1,  2.4.1-0,  2.4.0-3,  2.4.0-0, 

2.5.1-4,  2.5.1-3,  2.5.1-2,  2.5.1-1,  2.5.1-0,  2.4.1-1,  2.4.1-0,  2.4.0-3,  2.4.0-0,  2.3.3-1,  2.3.3-0,  2.3.2-0

Depends:

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

• ggcaller

• snippy

• cladeomatic

• bacgwasim

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install snp-sites

and update with:

conda update snp-sites

or use the docker container:

docker pull quay.io/biocontainers/snp-sites:<tag>

(see snp-sites/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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