recipe trtools

Toolkit for genome-wide analysis of tandem repeats https://trtools.readthedocs.io/

Homepage:

http://github.com/gymreklab/TRTools

Documentation:

https://trtools.readthedocs.io/

Developer docs:

https://github.com/gymreklab/TRTools

License:

MIT / MIT

Recipe:

/trtools/meta.yaml

package trtools

Versions:

4.2.1-0,  4.1.0-0,  4.0.2-0,  4.0.1-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  3.0.3-0,  3.0.2-0, 

4.2.1-0,  4.1.0-0,  4.0.2-0,  4.0.1-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  3.0.3-0,  3.0.2-0,  2.0.18-1,  2.0.18-0

Depends:

• cyvcf2 >=0.30.1

• matplotlib-base >=3.2.2

• numpy >=1.18.5

• pandas >=1.0.5

• pybedtools >=0.8.1

• pysam >=0.16.0.1

• python >=3.5

• scikit-learn >=0.23.1

• scipy >=1.4.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install trtools

and update with:

conda update trtools

or use the docker container:

docker pull quay.io/biocontainers/trtools:<tag>

(see trtools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trtools/README.html)