recipe twopaco

A fast constructor of the compressed de Bruijn graph from many genomes.

Homepage

https://github.com/medvedevgroup/TwoPaCo

License

Custom OSS

Recipe

/twopaco/meta.yaml

package twopaco

(downloads) docker_twopaco

Versions

0.9.2-2, 0.9.2-0

Depends libgcc-ng

>=4.9

Depends libstdcxx-ng

>=4.9

Depends tbb

>=2019.1

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install twopaco

and update with:

conda update twopaco

or use the docker container:

docker pull quay.io/biocontainers/twopaco:<tag>

(see twopaco/tags for valid values for <tag>)