recipe ucsc-pslmappostchain

Post genomic pslMap (TransMap) chaining. This takes transcripts that have been mapped via genomic chains adds back in blocks that didn’t get include in genomic chains due to complex rearrangements or other issues.

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-pslmappostchain/meta.yaml

package ucsc-pslmappostchain

(downloads) docker_ucsc-pslmappostchain

Versions

377-0, 366-0, 357-2, 357-1, 357-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-pslmappostchain

and update with:

conda update ucsc-pslmappostchain

or use the docker container:

docker pull quay.io/biocontainers/ucsc-pslmappostchain:<tag>

(see ucsc-pslmappostchain/tags for valid values for <tag>)