recipe umi_tools

Tools for dealing with Unique Molecular Identifiers (UMIs) / Random Molecular Tags (RMTs)

Homepage:

https://github.com/CGATOxford/UMI-tools

License:

MIT / MIT License

Recipe:

/umi_tools/meta.yaml

package umi_tools

Versions:

1.1.4-2,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-2,  1.1.1-1,  1.1.0-0, 

1.1.4-2,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-2,  1.1.1-1,  1.1.0-0,  1.0.1-2,  1.0.1-1,  1.0.1-0,  1.0.0-1,  1.0.0-0,  0.5.5-1,  0.5.5-0,  0.5.4-3,  0.5.4-2,  0.5.4-1,  0.5.4-0,  0.5.3-1,  0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.4-0,  0.4.3-0,  0.2.3-2,  0.2.3-1,  0.2.3-0

Depends:

• future

• libgcc-ng >=12

• matplotlib-base

• numpy >=1.7

• pandas >=0.12.0

• pybktree

• pysam >=0.16.0.1

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• regex

• scipy

Required By:

• ctseq

• fba

• cite-seq-count

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install umi_tools

and update with:

conda update umi_tools

or use the docker container:

docker pull quay.io/biocontainers/umi_tools:<tag>

(see umi_tools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/umi_tools/README.html)