- recipe usher
Ultrafast Sample Placement on Existing Trees (UShER).
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
- Links:
doi: 10.1038/s41588-021-00862-7, biotools: usher, usegalaxy-eu: usher_matutils, usegalaxy-eu: usher
- package usher¶
- versions:
0.6.4-0
,0.6.3-1
,0.6.3-0
,0.6.2-1
,0.6.2-0
,0.6.1-1
,0.6.1-0
,0.6.0-0
,0.5.6-2
,0.6.4-0
,0.6.3-1
,0.6.3-0
,0.6.2-1
,0.6.2-0
,0.6.1-1
,0.6.1-0
,0.6.0-0
,0.5.6-2
,0.5.6-1
,0.5.6-0
,0.5.5-0
,0.5.4-1
,0.5.4-0
,0.5.3-0
,0.5.2-2
,0.5.2-1
,0.5.2-0
,0.5.1-0
,0.5.0-1
,0.5.0-0
,0.4.8-4
,0.4.8-0
,0.4.7-0
,0.4.6-0
,0.4.4-0
,0.4.3-0
,0.4.2-0
,0.4.1-0
,0.4.0-1
,0.4.0-0
,0.3.5-0
,0.3.4-0
,0.3.2-0
,0.3.1-1
,0.3.1-0
,0.2.1-0
,0.2.0-1
,0.2.0-0
,0.1.3-0
- depends _openmp_mutex:
>=4.5
- depends boost-cpp:
- depends isa-l:
>=2.31.1,<3.0a0
- depends libgcc:
>=13
- depends libgomp:
- depends libstdcxx:
>=13
- depends mafft:
- depends openmpi:
>=4.1.6,<5.0a0
- depends openssh:
- depends protobuf:
<4
- depends tbb:
>=2020.2,<2021.0.0a0
- depends tbb-devel:
<2021.1.1
- depends ucsc-fatovcf:
- requirements:
- additional platforms:
linux-aarch64
,osx-arm64
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install usher and update with:: mamba update usher
To create a new environment, run:
mamba create --name myenvname usher
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/usher:<tag> (see `usher/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/usher/README.html)