recipe vase/0.5.1

Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies

Homepage:

https://github.com/david-a-parry/vase

License:

MIT / MIT

Recipe:

/vase/0.5.1/meta.yaml

package vase

(downloads) docker_vase

versions:

0.5.1-00.2.4-0

depends biopython:

depends mygene:

depends natsort:

depends numpy:

depends pysam:

>=0.17

depends python:

depends requests:

depends xlsxwriter:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vase

and update with::

   mamba update vase

To create a new environment, run:

mamba create --name myenvname vase

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vase:<tag>

(see `vase/tags`_ for valid values for ``<tag>``)

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