recipe abritamr

Running AMRFinderPlus for MDU

Homepage

https://github.com/MDU-PHL/abritamr

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/abritamr/meta.yaml

package abritamr

Versions

0.2.2-0,  0.1.0-0

Depends

• blast

• click

• hmmer

• jinja2

• libcurl

• ncbi-amrfinderplus

• pandas

• python 3.7.*

• snakemake

Required By

• bohra

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install abritamr

and update with:

conda update abritamr

or use the docker container:

docker pull quay.io/biocontainers/abritamr:<tag>

(see abritamr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/abritamr/README.html)