recipe advntr

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

Homepage

https://github.com/mehrdadbakhtiari/adVNTR

License

BSD 3-Clause

Recipe

/advntr/meta.yaml

package advntr

(downloads) docker_advntr

Versions

1.3.2-0, 1.3.1-0, 1.3.0-1, 1.2.0-0, 1.1.1-1, 1.1.1-0, 1.1.0-1, 1.1.0-0, 1.0.3-0

Depends biopython

Depends cython

Depends htslib

1.9.*

Depends joblib

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends matplotlib

Depends muscle

Depends networkx

1.11.*

Depends numpy

>=1.9.3,<2.0a0

Depends pysam

0.15.1.*

Depends python

>=2.7,<2.8.0a0

Depends scikit-learn

Depends scipy

>=1.2.1,<2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install advntr

and update with:

conda update advntr

or use the docker container:

docker pull quay.io/biocontainers/advntr:<tag>

(see advntr/tags for valid values for <tag>)