afterqc

downloads

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq…and other Illumina 1.8 or newer formats.

Home https://github.com/OpenGene/AfterQC
Versions 0.9.6
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/afterqc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install afterqc

and update with:

conda update afterqc

docker

A Docker container is available at https://quay.io/repository/biocontainers/afterqc.