recipe afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq…and other Illumina 1.8 or newer formats.

Homepage

https://github.com/OpenGene/AfterQC

License

MIT / MIT

Recipe

/afterqc/meta.yaml

package afterqc

(downloads) docker_afterqc

Versions

0.9.7-3, 0.9.7-2, 0.9.7-0, 0.9.6-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install afterqc

and update with:

conda update afterqc

or use the docker container:

docker pull quay.io/biocontainers/afterqc:<tag>

(see afterqc/tags for valid values for <tag>)