recipe akt

Ancestry and Kinship Tools (AKT)

Homepage:

https://github.com/Illumina/akt

License:

GPL3

Recipe:

/akt/meta.yaml

Links:

doi: 10.1093/bioinformatics/btw576

Ancestry and Kinship Tools (AKT) provides a handful of useful statistical genetics routines using the htslib API for input/output. This means it can seamlessly read BCF/VCF files and play nicely with bcftools.

package akt

versions:

0.3.3-6,  0.3.3-5,  0.3.3-4,  0.3.3-3,  0.3.3-2,  0.3.3-1,  0.3.3-0,  0.3.2-4,  0.3.2-3, 

0.3.3-6,  0.3.3-5,  0.3.3-4,  0.3.3-3,  0.3.3-2,  0.3.3-1,  0.3.3-0,  0.3.2-4,  0.3.2-3,  0.3.2-2,  0.3.2-1,  0.3.2-0,  0.2.0-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install akt

and update with::

   mamba update akt

To create a new environment, run:

mamba create --name myenvname akt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/akt:<tag>

(see `akt/tags`_ for valid values for ``<tag>``)

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