recipe amos

A Modular, Open-Source whole genome assembler

Homepage:

http://amos.sourceforge.net/wiki/index.php/AMOS

License:

Artistic License

Recipe:

/amos/meta.yaml

Links:

biotools: amos

package amos

versions:

3.1.0-3

depends jellyfish:

depends mummer:

depends perl-dbi:

depends perl-statistics-descriptive:

depends perl-threaded:

depends perl-xml-parser:

depends python:

2.7*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install amos

and update with::

   mamba update amos

To create a new environment, run:

mamba create --name myenvname amos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/amos:<tag>

(see `amos/tags`_ for valid values for ``<tag>``)

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Link to this page

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