recipe anvio

An interactive analysis and visualization platform for omics data

Homepage

http://merenlab.org/software/anvio/index.html

Developer docs

https://github.com/merenlab/anvio

License

GPL3 / GPL-3.0-or-later

Recipe

/anvio/meta.yaml

package anvio

(downloads) docker_anvio

Versions

5.5.0-0, 5.4.0-0, 5.3.0-0, 5.2.0-0, 5.1.0-1, 5.0.0-1, 4.0.0-2, 4.0.0-1, 4.0.0-0, 3.0.0-1, 3.0.0-0, 2.4.0-2, 2.4.0-1, 2.4.0-0, 2.3.2-0, 2.1.0-0

Depends anvio-minimal

5.5.0

Depends blast

Depends bowtie2

Depends bwa

Depends centrifuge

Depends diamond

Depends hmmer

Depends iqtree

Depends mcl

Depends megahit

Depends muscle

Depends prodigal

Depends samtools

Depends trimal

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install anvio

and update with:

conda update anvio

or use the docker container:

docker pull quay.io/biocontainers/anvio:<tag>

(see anvio/tags for valid values for <tag>)