recipe args_oap

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

Homepage:

https://github.com/xinehc/args_oap

License:

MIT / MIT

Recipe:

/args_oap/meta.yaml

package args_oap

versions:

3.2.4-0,  3.2.3-0,  3.2.2-0,  3.2.1-0,  3.2-0

depends blast:

>=2.12

depends bwa:

>=0.7.17

depends diamond:

>=2.0.15

depends pandas:

depends python:

>=3.7

depends samtools:

>=1.15

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install args_oap

and update with::

   mamba update args_oap

To create a new environment, run:

mamba create --name myenvname args_oap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/args_oap:<tag>

(see `args_oap/tags`_ for valid values for ``<tag>``)

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