recipe ariba

ARIBA: Antibiotic Resistance Identification By Assembly

Homepage

https://github.com/sanger-pathogens/ariba

License

GPL / GNU General Public License v3 (GPL-3.0)

Recipe

/ariba/meta.yaml

package ariba

(downloads) docker_ariba

Versions

2.14.1-0, 2.13.5-0, 2.13.3-0, 2.13.2-0, 2.12.1-0, 2.12.0-2, 2.12.0-0, 2.11.1-0, 2.11.0-0, 2.10.1-0, 2.10.0-0, 2.5.1-0, 0.6.0-0

Depends bcftools

>=1.2

Depends beautifulsoup4

>=4.1.0

Depends biopython

Depends bowtie2

>=2.3.1

Depends cd-hit

>=4.6.5

Depends dendropy

>=4.2.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends matplotlib

>=3.1.0

Depends mummer

>=3.23

Depends pyfastaq

>=3.12.0

Depends pymummer

<=0.10.3

Depends pysam

>=0.9.1

Depends python

>=3.6,<3.7.0a0

Depends samtools

>=1.2

Depends spades

>=3.5.0

Depends wget

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ariba

and update with:

conda update ariba

or use the docker container:

docker pull quay.io/biocontainers/ariba:<tag>

(see ariba/tags for valid values for <tag>)