recipe ariba

ARIBA: Antibiotic Resistance Identification By Assembly



GPL / GNU General Public License v3 (GPL-3.0)



package ariba

(downloads) docker_ariba



depends bcftools:


depends beautifulsoup4:


depends biopython:

depends bowtie2:


depends cd-hit:


depends dendropy:


depends libgcc-ng:


depends libstdcxx-ng:


depends libzlib:


depends matplotlib-base:


depends mummer:


depends pyfastaq:


depends pymummer:


depends pysam:


depends python:


depends python_abi:

3.8.* *_cp38

depends samtools:


depends spades:


depends wget:

depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ariba

and update with::

   mamba update ariba

To create a new environment, run:

mamba create --name myenvname ariba

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `ariba/tags`_ for valid values for ``<tag>``)

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