recipe asqcan

A combined pipeline for bacterial genome assembly, quality control and annotation

Homepage

https://github.com/bogemad/asqcan

License

GPL / GPLv3

Recipe

/asqcan/meta.yaml

package asqcan

(downloads) docker_asqcan

Versions

0.2-1, 0.2-0, 0.1-0

Depends blast

Depends blobtools

Depends fastqc

Depends parallel

Depends prokka

Depends python

>=2.7,<2.8.0a0

Depends quast

Depends spades

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install asqcan

and update with:

conda update asqcan

or use the docker container:

docker pull quay.io/biocontainers/asqcan:<tag>

(see asqcan/tags for valid values for <tag>)