recipe astalavista

AStalavista is a computer program to extract alternative splicing (AS) events from a given genomic annotation of exon-intron gene coordinates. By comparing all given transcripts, AStalavista detects the variations in their splicing structure and identify all AS events (like exon skipping, alternate donor, etc) by assigning to each of them an AS code.

Homepage

http://sammeth.net/confluence/display/ASTA/Home

License

BSD

Recipe

/astalavista/meta.yaml

Links

biotools: astalavista, doi: 10.1101/gr.121947.111

package astalavista

(downloads) docker_astalavista

Versions

4.0-1, 4.0-0, 3.2-0

Depends openjdk

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install astalavista

and update with:

conda update astalavista

or use the docker container:

docker pull quay.io/biocontainers/astalavista:<tag>

(see astalavista/tags for valid values for <tag>)