recipe ataqv

ataqv is a toolkit for measuring and comparing ATAC-seq results. It was written to help understand how well ATAC-seq assays have worked, and to make it easier to spot differences that might be caused by library prep or sequencing.

Homepage:

https://parkerlab.github.io/ataqv/

Documentation:

https://github.com/ParkerLab/ataqv/blob/master/README.rst

Developer docs:

https://github.com/ParkerLab/ataqv

License:

GPL-3.0-only

Recipe:

/ataqv/meta.yaml

package ataqv

versions:

1.3.1-5,  1.3.1-4,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1, 

1.3.1-5,  1.3.1-4,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.1.1-2,  1.1.1-1,  1.1.1-0,  1.0.0-1,  1.0.0-0

depends boost-cpp:

depends coreutils:

depends htslib:

>=1.21,<1.22.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends ncurses:

>=6.5,<7.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends zlib:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ataqv

and update with::

   mamba update ataqv

To create a new environment, run:

mamba create --name myenvname ataqv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ataqv:<tag>

(see `ataqv/tags`_ for valid values for ``<tag>``)

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