recipe atlas-metadata-validator

A MAGE-TAB validator for Expression Atlas and Single Cell Expression Atlas



APACHE / Apache Software



This is a python module to parse a set of MAGE-TAB files and check for compatibility with the Expression Atlas and Single Cell Expression Atlas analysis pipelines. The main validation script automatically detects the experiment type from the MAGE-TAB and runs the respective tests. Currently general checks (for bulk and single-cell experiment) as well as Single Cell Expression Atlas specific checks are supported.

package atlas-metadata-validator

(downloads) docker_atlas-metadata-validator


1.3.0-0, 1.2.1-0, 1.2.0-0, 1.1.0-0, 1.0.0-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install atlas-metadata-validator

and update with:

conda update atlas-metadata-validator

or use the docker container:

docker pull<tag>

(see atlas-metadata-validator/tags for valid values for <tag>)