recipe atlas

ATLAS, a suite of methods to accurately genotype and estimate genetic diversity

Homepage:

https://bitbucket.org/wegmannlab/atlas/wiki/Home

License:

GPLv3

Recipe:

/atlas/meta.yaml

package atlas

(downloads) docker_atlas

versions:

0.9.9-3,  0.9.9-2,  0.9.9-1,  0.9.9-0

depends armadillo:

>=12.2,<13.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install atlas

and update with::

   mamba update atlas

To create a new environment, run:

mamba create --name myenvname atlas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/atlas:<tag>

(see `atlas/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/atlas/README.html)