recipe atlas

ATLAS: Analysis Tools for Ancient and Low-depth Samples

Homepage:

https://atlaswiki.netlify.app

License:

MPL-2.0

Recipe:

/atlas/meta.yaml

package atlas

versions:

2.0.0-0,  0.9.9-3,  0.9.9-2,  0.9.9-1,  0.9.9-0

depends __glibc:

>=2.17,<3.0.a0

depends _openmp_mutex:

>=4.5

depends armadillo:

>=14.0,<15.0a0

depends fmt:

>=10.2.1,<11.0a0

depends htslib:

>=1.21,<1.22.0a0

depends jsoncpp:

>=1.9.5,<1.9.6.0a0

depends lapack:

depends libgcc:

>=12

depends libgomp:

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends nlohmann_json:

depends openblas:

depends sysroot_linux-64:

2.17.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install atlas

and update with::

   mamba update atlas

To create a new environment, run:

mamba create --name myenvname atlas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/atlas:<tag>

(see `atlas/tags`_ for valid values for ``<tag>``)

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Link to this page

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