recipe atropos

trim adapters from high-throughput sequencing reads

Homepage:

https://github.com/jdidion/atropos

Documentation:

https://atropos.readthedocs.io

License:

CC0 and partly MIT

Recipe:

/atropos/meta.yaml

package atropos

versions:

1.1.32-2,  1.1.32-1,  1.1.32-0,  1.1.31-3,  1.1.31-2,  1.1.31-1,  1.1.31-0,  1.1.29-1,  1.1.29-0, 

1.1.32-2,  1.1.32-1,  1.1.32-0,  1.1.31-3,  1.1.31-2,  1.1.31-1,  1.1.31-0,  1.1.29-1,  1.1.29-0,  1.1.28-1,  1.1.28-0,  1.1.27-0,  1.1.26-0,  1.1.25-0,  1.1.24-0,  1.1.23-0,  1.1.22-1,  1.1.22-0,  1.1.21-0,  1.1.19-0,  1.1.18-1,  1.1.18-0,  1.1.16-0,  1.1.10-0,  1.1.5-0,  1.1.4-0,  1.1.2-0,  1.0.23-0

depends jinja2:

depends libgcc-ng:

>=12

depends pysam:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install atropos

and update with::

   mamba update atropos

To create a new environment, run:

mamba create --name myenvname atropos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/atropos:<tag>

(see `atropos/tags`_ for valid values for ``<tag>``)

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