recipe atropos

trim adapters from high-throughput sequencing reads

Homepage:

https://atropos.readthedocs.io/

License:

CC0 and partly MIT

Recipe:

/atropos/meta.yaml

package atropos

Versions:

1.1.31-3,  1.1.31-2,  1.1.31-1,  1.1.31-0,  1.1.29-1,  1.1.29-0,  1.1.28-1,  1.1.28-0,  1.1.27-0, 

1.1.31-3,  1.1.31-2,  1.1.31-1,  1.1.31-0,  1.1.29-1,  1.1.29-0,  1.1.28-1,  1.1.28-0,  1.1.27-0,  1.1.26-0,  1.1.25-0,  1.1.24-0,  1.1.23-0,  1.1.22-1,  1.1.22-0,  1.1.21-0,  1.1.19-0,  1.1.18-1,  1.1.18-0,  1.1.16-0,  1.1.10-0,  1.1.5-0,  1.1.4-0,  1.1.2-0,  1.0.23-0

Depends:

• jinja2

• libgcc-ng >=12

• pysam

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• tqdm

Required By:

• massiveqc

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install atropos

and update with:

conda update atropos

or use the docker container:

docker pull quay.io/biocontainers/atropos:<tag>

(see atropos/tags for valid values for <tag>)

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